Dataset Open Access

Dataset to: Environmental controls of dark CO2 fixation in wetland microbiomes

Grüterich, Luise; Woodhouse, Jason Nicholas; Mueller, Peter; Tiemann, Amos; Ruscheweyh, Hans-Joachim; Sunagawa, Shinichi; Grossart, Hans-Peter; Streit, Wolfgang R.


MARC21 XML Export

<?xml version='1.0' encoding='UTF-8'?>
<record xmlns="http://www.loc.gov/MARC21/slim">
  <leader>00000nmm##2200000uu#4500</leader>
  <datafield tag="542" ind1=" " ind2=" ">
    <subfield code="l">open</subfield>
  </datafield>
  <datafield tag="909" ind1="C" ind2="O">
    <subfield code="o">oai:fdr.uni-hamburg.de:13933</subfield>
    <subfield code="p">user-uhh</subfield>
    <subfield code="p">user-rtg2530</subfield>
  </datafield>
  <datafield tag="773" ind1=" " ind2=" ">
    <subfield code="a">10.25592/uhhfdm.12482</subfield>
    <subfield code="i">isVersionOf</subfield>
    <subfield code="n">doi</subfield>
  </datafield>
  <controlfield tag="005">20240319102529.0</controlfield>
  <datafield tag="540" ind1=" " ind2=" ">
    <subfield code="u">https://creativecommons.org/licenses/by/4.0/legalcode</subfield>
    <subfield code="a">Creative Commons Attribution 4.0 International</subfield>
  </datafield>
  <datafield tag="260" ind1=" " ind2=" ">
    <subfield code="c">2023-06-07</subfield>
  </datafield>
  <datafield tag="041" ind1=" " ind2=" ">
    <subfield code="a">eng</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">Wood-Ljungdahl pathway, reverse TCA cycle, metagenomics, metatranscriptomics</subfield>
  </datafield>
  <datafield tag="500" ind1=" " ind2=" ">
    <subfield code="a">This study was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) within the Research Training Group2530: "Biota-mediated effects on Carbon cycling in Estuaries" (project number 407270017; contribution to Universität Hamburg and Leibniz-Institut für Gewässerökologie und Binnenfischerei im Forschungsverbund Berlin e.V.).
This work was supported by the DFG Research Infrastructure NGS_CC (project 407495230) as part of the Next Generation Sequencing Competence Network (project 423957469) and core funding from ETH Zürich to the Microbiome Research Laboratory headed by S.S. Transcriptome and 16S rRNA sequencing were carried out at the Competence Centre for Genomic Analysis (Kiel).
Peter Mueller was supported by the Deutsche Forschungsgemeinschaft (DFG; German Research Foundation) in the framework of the Emmy Noether Program (502681570).</subfield>
  </datafield>
  <datafield tag="245" ind1=" " ind2=" ">
    <subfield code="a">Dataset to: Environmental controls of dark CO2 fixation in wetland microbiomes</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">20746195</subfield>
    <subfield code="u">https://www.fdr.uni-hamburg.de/record/13933/files/16S_DADA2_ASV.csv</subfield>
    <subfield code="z">md5:d5fc8ce00250e5a65e7d85fb310fc509</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">18585031</subfield>
    <subfield code="u">https://www.fdr.uni-hamburg.de/record/13933/files/16S_DADA2_TAXA.csv</subfield>
    <subfield code="z">md5:e7f52c7cb58c730efe4cf1ad4f109ff6</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">6408931</subfield>
    <subfield code="u">https://www.fdr.uni-hamburg.de/record/13933/files/16S_PHYLOSEQ.RDS</subfield>
    <subfield code="z">md5:6a6dc0427a5d638de79a763b7e101b65</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">21680907</subfield>
    <subfield code="u">https://www.fdr.uni-hamburg.de/record/13933/files/gene_cluster_abundances_STRE22-1_MAGS_9590_insertcounts.lengthnorm.profile.cellab.profile.gz</subfield>
    <subfield code="z">md5:56ba8cf5aeb2b50fab764d66eca64113</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">10033032</subfield>
    <subfield code="u">https://www.fdr.uni-hamburg.de/record/13933/files/gene_cluster_annotations_STRE22-1_MAGS_9590_kegg-annotations.tsv.gz</subfield>
    <subfield code="z">md5:8ec6bd36cd9398f9dbd827662e399687</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">15219043</subfield>
    <subfield code="u">https://www.fdr.uni-hamburg.de/record/13933/files/gene_cluster_membership_STRE22-1_MAGS_9590.clstr.gz</subfield>
    <subfield code="z">md5:da8b0a9c326b2a76db0c6b16c7b0177d</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">6547</subfield>
    <subfield code="u">https://www.fdr.uni-hamburg.de/record/13933/files/gene_taxonomy_STRE22-1.prok.genomes_2_gtdb.tsv.gz</subfield>
    <subfield code="z">md5:9ffd23e9ac84c9f5f6dad7fab069a1f9</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">58370</subfield>
    <subfield code="u">https://www.fdr.uni-hamburg.de/record/13933/files/LG_ENA_submission_reads_summary.csv</subfield>
    <subfield code="z">md5:61375fcb24996b9558b69259cf4be2ff</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">13043</subfield>
    <subfield code="u">https://www.fdr.uni-hamburg.de/record/13933/files/raw_data_metabolites_organic_matter.xlsx</subfield>
    <subfield code="z">md5:8e7c016d8522b6872f7ad347a2dd560f</subfield>
  </datafield>
  <datafield tag="650" ind1="1" ind2="7">
    <subfield code="a">cc-by</subfield>
    <subfield code="2">opendefinition.org</subfield>
  </datafield>
  <datafield tag="520" ind1=" " ind2=" ">
    <subfield code="a">&lt;p&gt;This dataset supports the paper: &amp;quot;Environmental controls of dark CO&lt;sub&gt;2&lt;/sub&gt; fixation in wetland microbiota&amp;quot;.&lt;/p&gt;

&lt;p&gt;It contains genecluster abundances, annotations, taxonomy and membership for the metagenomic and metatranscriptomic analyses aswell as ASV tables for the 16S rRNA gene analyses.&lt;/p&gt;</subfield>
  </datafield>
  <datafield tag="980" ind1=" " ind2=" ">
    <subfield code="a">dataset</subfield>
  </datafield>
  <datafield tag="980" ind1=" " ind2=" ">
    <subfield code="a">user-rtg2530</subfield>
  </datafield>
  <datafield tag="980" ind1=" " ind2=" ">
    <subfield code="a">user-uhh</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="a">Woodhouse, Jason Nicholas</subfield>
    <subfield code="u">University of Hamburg; Leibniz Institute of Freshwater Biology and Inland Fisheries</subfield>
    <subfield code="0">(orcid)0000-0003-1129-5396</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="a">Mueller, Peter</subfield>
    <subfield code="u">Münster University</subfield>
    <subfield code="0">(orcid)0000-0001-6974-5498</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="a">Tiemann, Amos</subfield>
    <subfield code="u">University of Hamburg</subfield>
    <subfield code="0">(orcid)0009-0008-3951-4814</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="a">Ruscheweyh, Hans-Joachim</subfield>
    <subfield code="u">ETH Zurich</subfield>
    <subfield code="0">(orcid)0000-0001-7473-6086</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="a">Sunagawa, Shinichi</subfield>
    <subfield code="u">ETH Zurich</subfield>
    <subfield code="0">(orcid)0000-0003-3065-0314</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="a">Grossart, Hans-Peter</subfield>
    <subfield code="u">Leibniz Institute of Freshwater Biology and Inland Fisheries; Potsdam University</subfield>
    <subfield code="0">(orcid)0000-0002-9141-0325</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="a">Streit, Wolfgang R.</subfield>
    <subfield code="u">University of Hamburg</subfield>
    <subfield code="0">(orcid)0000-0001-7617-7396</subfield>
  </datafield>
  <datafield tag="024" ind1=" " ind2=" ">
    <subfield code="a">10.25592/uhhfdm.13933</subfield>
    <subfield code="2">doi</subfield>
  </datafield>
  <datafield tag="100" ind1=" " ind2=" ">
    <subfield code="a">Grüterich, Luise</subfield>
    <subfield code="u">University of Hamburg</subfield>
    <subfield code="0">(orcid)0000-0002-6819-007X</subfield>
  </datafield>
  <controlfield tag="001">13933</controlfield>
</record>

Cite record as